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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_20869060_20874975_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
20869060 - 20874975
Intron Length:
5916

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTAAA
5'SS Class:
strong_major
3'SS Sequence:
TCATTTTTAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTTTCTTTAACT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
85.1
25.8
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
80.1
0.68
0.9
76.9
35.9
Minor 5ss
35.1
-1.7
2.7
42.4
44.3
Minor BPS
94.7
1.48
0.6
103.9
16.9

Associated Gene:

Gene:
CTNNA2
Ensembl Gene ID:
ENSAPLG00000002947
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026967
20868377 - 20891408
23032