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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_20889084_20924267_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20889084 - 20924267
Intron Length:
35184

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
GATTTCATTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TGATTCTTATTC
Flanking Amino Acid:
FREHANKLVEVANLACSISN
Intron Amino Acid Position:
47

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.3
1.11
0.7
90.5
20.5
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
73.6
0.53
0.9
67.4
38.6
Minor 5ss
34.4
-1.8
3.3
48.7
47.5
Minor BPS
60.9
0.32
1.6
67.5
38.3

Associated Gene:

Gene:
CTNNA2
Ensembl Gene ID:
ENSAPLG00000002947
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003009
20874513 - 20988288
113776
ENSAPLT00000003007
20874976 - 20988288
113313