Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_20924361_20924627_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

20924361 - 20924627

Intron Length:

267

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGCAAG

5'SS Class:

strong_major

3'SS Sequence:

TTTTGAATAACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTGAA

U12 Branch Point Sequence:

TTTTGAATAACA

Flanking Amino Acid:

ATQIDSLCPQVINAALTLAA

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.6

0.93

0.9

77.9

38.6

Major BPS

87.2

0.92

0.8

77.7

37.1

Major PPT

73.1

0.52

67.7

41.6

Minor 5ss

38.7

-1.3

2.8

47.8

47.9

Minor BPS

53.5

0.11

2.3

77.79

38.6

Associated Gene:

Gene:

CTNNA2

Ensembl Gene ID:

ENSAPLG00000002947

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000003009

20874513 - 20988288

113776

ENSAPLT00000003007

20874976 - 20988288

113313