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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_20953402_20956469_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20953402 - 20956469
Intron Length:
3068

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGGACA
5'SS Class:
strong_major
3'SS Sequence:
TTGTATTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TTGTTCATAATT
Flanking Amino Acid:
MIMMEMTDFTRGKGPLKNTS
Intron Amino Acid Position:
346

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.8
0.96
0.8
81.4
32.1
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
81.2
0.7
0.9
76
37.6
Minor 5ss
32.5
-2
3.1
40.7
45.3
Minor BPS
68.6
0.66
1.6
84.28
36.7

Associated Gene:

Gene:
CTNNA2
Ensembl Gene ID:
ENSAPLG00000002947
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003009
20874513 - 20988288
113776
ENSAPLT00000003007
20874976 - 20988288
113313