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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_20956576_20959688_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20956576 - 20959688
Intron Length:
3113

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATAACA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCTCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
CTGTATTTAATC
Flanking Amino Acid:
DKLARAVADQCPDSACKQDL
Intron Amino Acid Position:
382

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
76.3
32.4
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
89.5
0.89
0.6
84.8
22.8
Minor 5ss
33.8
-1.8
2.8
42
44.2
Minor BPS
61.9
0.35
1.5
66.55
39.9

Associated Gene:

Gene:
CTNNA2
Ensembl Gene ID:
ENSAPLG00000002947
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003009
20874513 - 20988288
113776
ENSAPLT00000003007
20874976 - 20988288
113313