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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_20959824_20987629_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20959824 - 20987629
Intron Length:
27806

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGCTGG
5'SS Class:
major
3'SS Sequence:
TTTCTTTTCATAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTTCTTTTCATA
Flanking Amino Acid:
NLGGELIVSGLDSATSLIQA
Intron Amino Acid Position:
427

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1.1
60.6
46.7
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
86.7
0.82
0.6
83.7
24.6
Minor 5ss
42.8
-0.8
2.9
47.3
48.1
Minor BPS
57
0.21
1.7
71.66
34.9

Associated Gene:

Gene:
CTNNA2
Ensembl Gene ID:
ENSAPLG00000002947
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003007
20874976 - 20988288
113313