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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_20972894_20987629_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20972894 - 20987629
Intron Length:
14736

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTCATAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTTCTTTTCATA
Flanking Amino Acid:
LETGSGDSSTLDSATSLIQA
Intron Amino Acid Position:
475

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
77.8
32
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
86.7
0.82
0.6
83.7
24.6
Minor 5ss
31.1
-2.2
2.7
37.5
40.1
Minor BPS
57
0.21
1.7
71.66
34.9

Associated Gene:

Gene:
CTNNA2
Ensembl Gene ID:
ENSAPLG00000002947
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003009
20874513 - 20988288
113776