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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_21011513_21013429_F

Intron Information:

Intron Rank:
134965
Intron Class:
major
Intron Phase:
Intron Coordinates:
21011513 - 21013429
Intron Length:
1917

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGCGCTTA
5'SS Class:
major
3'SS Sequence:
ACTGTCTTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
ACTGTCTTCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
71.3
37.1
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
75.2
0.57
0.9
68.4
36.8
Minor 5ss
40.9
-1
3.2
55.4
48.8
Minor BPS
53.7
0.11
1.9
64.52
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022609
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029205
20999344 - 21015556
16213