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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_21013506_21015263_F

Intron Information:

Intron Rank:
134966
Intron Class:
major
Intron Phase:
Intron Coordinates:
21013506 - 21015263
Intron Length:
1758

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TATTATTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATTAT
U12 Branch Point Sequence:
TTGTCTATCATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
75.9
0.64
1
66.1
40.5
Major PPT
85.7
0.8
0.8
77.4
41.1
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
49.6
-0
2
67.56
39.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022609
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037583
20999344 - 21015556
16213
ENSAPLT00000029205
20999344 - 21015556
16213