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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_21040894_21043625_F

Intron Information:

Intron Rank:
140573
Intron Class:
major
Intron Phase:
Intron Coordinates:
21040894 - 21043625
Intron Length:
2732

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TCTTGCTCCAAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCTT
U12 Branch Point Sequence:
TCTTGCTCCAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
79.8
35.3
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
66.9
0.38
1
67
33.2
Minor 5ss
35.2
-1.7
2.7
39.5
40.9
Minor BPS
43.8
-0.5
2.4
60.51
45.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025693
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037760
21040542 - 21189711
149170
ENSAPLT00000021400
21040542 - 21056313
15772