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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_21043708_21175365_F

Intron Information:

Intron Rank:
140578
Intron Class:
major
Intron Phase:
Intron Coordinates:
21043708 - 21175365
Intron Length:
131658

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGTA
5'SS Class:
strong_major
3'SS Sequence:
TTACCCCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
CTTTCGTTACCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.5
1
0.8
84.3
26.3
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
80
0.67
0.8
73.7
31
Minor 5ss
34
-1.8
3.5
46.9
48.4
Minor BPS
55.9
0.17
2.3
73.88
43.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025693
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037760
21040542 - 21189711
149170