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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_21175469_21189581_F

Intron Information:

Intron Rank:
140579
Intron Class:
major
Intron Phase:
Intron Coordinates:
21175469 - 21189581
Intron Length:
14113

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTGCA
5'SS Class:
strong_major
3'SS Sequence:
AAGTTTTCTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTGAA
U12 Branch Point Sequence:
TGAACATTGAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1.1
75
35.3
Major BPS
67.1
0.42
1
59
37.9
Major PPT
77.6
0.62
0.9
74.4
40.5
Minor 5ss
38.5
-1.3
3.1
50.7
45.7
Minor BPS
48.4
-0.1
1.8
59.65
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025693
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037760
21040542 - 21189711
149170