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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_21445373_21448748_R

Intron Information:

Intron Rank:
129520
Intron Class:
major
Intron Phase:
Intron Coordinates:
21445373 - 21448748
Intron Length:
3376

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAATGACT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTCAACTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTCTTTTCAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
78
36.1
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
72.2
0.5
0.9
67.8
38
Minor 5ss
35
-1.7
3.2
50
45.9
Minor BPS
68.6
0.66
1.5
83.3
38.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016882
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022534
21438647 - 21449137
10491