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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_21454743_21454847_R

Intron Information:

Intron Rank:
140416
Intron Class:
major
Intron Phase:
Intron Coordinates:
21454743 - 21454847
Intron Length:
105

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGATGG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCATTGAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTTTTCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
68.5
39.2
Major BPS
100
1.24
0.5
100
0
Major PPT
68
0.4
1.7
82
34.8
Minor 5ss
31.9
-2.1
3
38.5
46.6
Minor BPS
67.5
0.63
1.7
86.64
33.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022930
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025595
21454716 - 21507411
52696