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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_21454965_21500965_R

Intron Information:

Intron Rank:
140417
Intron Class:
major
Intron Phase:
Intron Coordinates:
21454965 - 21500965
Intron Length:
46001

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGAACT
5'SS Class:
strong_major
3'SS Sequence:
TAATCTATTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAC
U12 Branch Point Sequence:
AGCCCTGTAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
80.9
31
Major BPS
82.3
0.8
0.8
83.6
25.8
Major PPT
77.9
0.63
0.9
74.7
39.3
Minor 5ss
37.8
-1.4
3
51.4
38.8
Minor BPS
47
-0.2
2
54.41
38

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022930
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025595
21454716 - 21507411
52696