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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_21497046_21500965_R

Intron Information:

Intron Rank:
140419
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
21497046 - 21500965
Intron Length:
3920

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGAACT
5'SS Class:
strong_major
3'SS Sequence:
ACCCCCACAACAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TCTTTTCTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
80.9
31
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
58.6
0.19
0.9
51.6
30.4
Minor 5ss
37.8
-1.4
3
51.4
38.8
Minor BPS
64.4
0.45
1.6
75.11
36.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022930
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037664
21496859 - 21501038
4180