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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_21537425_21542297_F

Intron Information:

Intron Rank:
144711
Intron Class:
major
Intron Phase:
Intron Coordinates:
21537425 - 21542297
Intron Length:
4873

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGATAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCTCCAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAG
U12 Branch Point Sequence:
TATCAGTGAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.1
1.02
0.7
86.8
22.9
Major BPS
72.5
0.56
1.5
71.7
44.6
Major PPT
79.5
0.66
1
79.5
32.9
Minor 5ss
39.6
-1.2
3.1
55.7
48.5
Minor BPS
46.6
-0.2
2.3
64.57
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027990
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043806
21537253 - 21550123
12871