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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_21587980_21620472_R

Intron Information:

Intron Rank:
135578
Intron Class:
major
Intron Phase:
Intron Coordinates:
21587980 - 21620472
Intron Length:
32493

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGATTC
5'SS Class:
strong_major
3'SS Sequence:
GTCTTTCCTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAA
U12 Branch Point Sequence:
TCTTTCCTACAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.8
81.1
26.4
Major BPS
76.5
0.66
0.8
75.9
24.9
Major PPT
82.7
0.73
0.8
76.5
32.3
Minor 5ss
37.1
-1.5
3.2
49.9
46.6
Minor BPS
46.4
-0.4
2.1
56.57
44.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020371
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019290
21587237 - 21621215
33979