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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_21701054_21701826_F

Intron Information:

Intron Rank:
127743
Intron Class:
major
Intron Phase:
Intron Coordinates:
21701054 - 21701826
Intron Length:
773

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTAAGTACC
5'SS Class:
major
3'SS Sequence:
AATTTCCACACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAA
U12 Branch Point Sequence:
CATCCCTTTACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75
0.59
1.1
71.8
38.2
Major BPS
73.5
0.59
1
81.3
29.9
Major PPT
69.4
0.44
1
62.8
37.9
Minor 5ss
39
-1.2
2.7
48.2
40.4
Minor BPS
63.7
0.42
1.7
70.11
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018865
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045680
21688828 - 21702087
13260