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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_21791978_21803223_R

Intron Information:

Intron Rank:
155062
Intron Class:
major
Intron Phase:
Intron Coordinates:
21791978 - 21803223
Intron Length:
11246

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TTTAAATTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
ATCTCTTTAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.8
79.3
28.9
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
80.6
0.69
0.9
73.4
40.6
Minor 5ss
30.7
-2.2
2.6
33.5
35.6
Minor BPS
74
0.83
1.3
83.47
37.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030932
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026631
21786227 - 21838753
52527