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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_21853336_21854582_R

Intron Information:

Intron Rank:
134536
Intron Class:
major
Intron Phase:
Intron Coordinates:
21853336 - 21854582
Intron Length:
1247

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTCTG
5'SS Class:
strong_major
3'SS Sequence:
GTCTTCCTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCATAAA
U12 Branch Point Sequence:
TAGCTCATAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
68.8
43.8
Major BPS
66
0.4
1.1
66.5
36.3
Major PPT
77.7
0.62
0.8
69.3
36.9
Minor 5ss
31
-2.2
3.2
40
46.1
Minor BPS
49.2
-0
1.7
60.33
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019689
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024796
21852789 - 22051719
198931