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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_21912889_21917850_F

Intron Information:

Intron Rank:
136104
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
21912889 - 21917850
Intron Length:
4962

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATCTGC
5'SS Class:
major
3'SS Sequence:
CCTTGGAAGCCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
AAGTAATTAATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
66
40.9
Major BPS
83
0.82
0.8
82
24.9
Major PPT
55.2
0.12
1.1
47.1
44
Minor 5ss
44.3
-0.6
2.8
59.8
44.8
Minor BPS
49
-0.2
1.8
53.48
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023335
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039360
21911083 - 21918066
6984