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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_22117212_22117377_F

Intron Information:

Intron Rank:
136295
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
22117212 - 22117377
Intron Length:
166

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATCCCAA
5'SS Class:
weak_major
3'SS Sequence:
TTTTTTCAATCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTTTTTTCAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.7
0.39
1.2
57.7
43
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
82
0.72
0.9
83.2
32.2
Minor 5ss
48.8
-0.1
2.6
64.7
46.6
Minor BPS
68.3
0.55
1.4
77.75
32.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023435
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027554
22117131 - 22122420
5290