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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_22255914_22284675_F

Intron Information:

Intron Rank:
142178
Intron Class:
major
Intron Phase:
Intron Coordinates:
22255914 - 22284675
Intron Length:
28762

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TTTGCCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
AGTTACTTATTA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.9
84.5
29.1
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
86.5
0.82
0.8
80.9
31
Minor 5ss
44.3
-0.6
2.8
59
45.5
Minor BPS
56.7
0.21
1.8
67.77
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026564
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041976
22255705 - 22284964
29260