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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_22282233_22284675_F

Intron Information:

Intron Rank:
142177
Intron Class:
major
Intron Phase:
Intron Coordinates:
22282233 - 22284675
Intron Length:
2443

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGAGGC
5'SS Class:
strong_major
3'SS Sequence:
TTTGCCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
AGTTACTTATTA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.83
0.9
69.4
35.7
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
86.5
0.82
0.8
80.9
31
Minor 5ss
25.3
-2.8
3.2
32.7
42.3
Minor BPS
56.7
0.21
1.8
67.77
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026564
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032998
22277096 - 22285386
8291