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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_22322699_22323508_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22322699 - 22323508
Intron Length:
810

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTATA
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTCTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TGCATTTTAACT
Flanking Amino Acid:
VICQGFTGKQGTFHSQQALE
Intron Amino Acid Position:
51

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
88.8
25
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
84.5
0.78
0.7
79.6
25.9
Minor 5ss
45.4
-0.5
2.5
59.5
45.1
Minor BPS
67.4
0.63
1.3
76.69
40.1

Associated Gene:

Gene:
SUCLG1
Ensembl Gene ID:
ENSAPLG00000015246
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031449
22316490 - 22329551
13062
ENSAPLT00000015908
22316453 - 22329551
13099