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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_22323613_22327603_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22323613 - 22327603
Intron Length:
3991

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGAGAG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTCCTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTAAT
U12 Branch Point Sequence:
TCATTAATGATT
Flanking Amino Acid:
SVAVSGDFCLVHQNGVRHCS
Intron Amino Acid Position:
34

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.8
71.2
34.6
Major BPS
79.4
0.73
0.9
79.6
29.1
Major PPT
84.8
0.78
0.7
78.2
30.7
Minor 5ss
24.3
-3
3.1
28.4
43.8
Minor BPS
46.7
-0.1
1.8
65.16
39.5

Associated Gene:

Gene:
SUCLG1
Ensembl Gene ID:
ENSAPLG00000015246
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031449
22316490 - 22329551
13062