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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_22327658_22329505_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22327658 - 22329505
Intron Length:
1848

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCC|GTGAGTACC
5'SS Class:
major
3'SS Sequence:
GCTTTTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTCAT
U12 Branch Point Sequence:
ACTTCATAAATT
Flanking Amino Acid:
TARLLGRFLRHAVMFTVMSV
Intron Amino Acid Position:
16

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.3
0.38
1.3
66.2
39.6
Major BPS
78.6
0.71
1
79.6
32.9
Major PPT
87
0.83
0.7
84.6
30.3
Minor 5ss
33.4
-1.9
2.7
42.8
36.9
Minor BPS
56.6
0.29
1.9
75.24
41.9

Associated Gene:

Gene:
SUCLG1
Ensembl Gene ID:
ENSAPLG00000015246
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031449
22316490 - 22329551
13062