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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_22354792_22355204_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22354792 - 22355204
Intron Length:
413

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCGGG
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCCCTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCCAC
U12 Branch Point Sequence:
CCACACTGAATT
Flanking Amino Acid:
TLSDLDRHPELDVAIDGADE
Intron Amino Acid Position:
142

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
0.9
67.1
44.6
Major BPS
67.4
0.43
1.3
78.4
35.2
Major PPT
83
0.74
0.7
76.7
25.5
Minor 5ss
35.7
-1.6
3.3
46.8
48.5
Minor BPS
48.2
-0
1.7
60.26
43

Associated Gene:

Gene:
RPIA
Ensembl Gene ID:
ENSAPLG00000015356
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016023
22350273 - 22363640
13368
ENSAPLT00000024930
22350273 - 22363822
13550