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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_22359751_22363394_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22359751 - 22363394
Intron Length:
3644

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGACCC
5'SS Class:
strong_major
3'SS Sequence:
CCTTGATTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTTGAT
U12 Branch Point Sequence:
CTCTCCTTGATT
Flanking Amino Acid:
ACAAVDRHVQNNQVLGIGSG
Intron Amino Acid Position:
83

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
68.6
36.5
Major BPS
71.5
0.53
1.1
63
43.2
Major PPT
79.5
0.66
0.9
72.8
36.4
Minor 5ss
27.8
-2.5
2.9
34.2
41.4
Minor BPS
75.8
0.89
1.2
82.6
39.5

Associated Gene:

Gene:
RPIA
Ensembl Gene ID:
ENSAPLG00000015356
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016023
22350273 - 22363640
13368