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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_22389515_22391488_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22389515 - 22391488
Intron Length:
1974

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGCC
5'SS Class:
strong_major
3'SS Sequence:
CCTTGTCCCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAA
U12 Branch Point Sequence:
GTATGTTTGAGT
Flanking Amino Acid:
SYGLSSYTGKVKYICSTMGC
Intron Amino Acid Position:
167

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.95
0.8
76
31.7
Major BPS
68.1
0.45
1.3
78.7
34.9
Major PPT
71.8
0.49
0.8
69.6
31.2
Minor 5ss
31.7
-2.1
3.3
42.5
44.5
Minor BPS
48.4
-0
2.1
68.05
43.2

Associated Gene:

Gene:
EIF2AK3
Ensembl Gene ID:
ENSAPLG00000015496
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016182
22370110 - 22410834
40725