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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_22391620_22393646_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22391620 - 22393646
Intron Length:
2027

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TTTCTATGAAGT
Flanking Amino Acid:
RAVGPRSGNEKWNFSVGHFE
Intron Amino Acid Position:
210

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
79
35.3
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
89.1
0.88
0.6
88.9
20.4
Minor 5ss
38
-1.4
3.3
49.5
41.1
Minor BPS
49.3
0.02
2
75.4
40.8

Associated Gene:

Gene:
EIF2AK3
Ensembl Gene ID:
ENSAPLG00000015496
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016182
22370110 - 22410834
40725