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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_22393882_22394075_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22393882 - 22394075
Intron Length:
194

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGGAA
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTTCTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAATAT
U12 Branch Point Sequence:
ATAACAGTAATT
Flanking Amino Acid:
RGGHLEWEYQFCTPIASAWL
Intron Amino Acid Position:
289

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
69.3
37.4
Major BPS
67.5
0.44
1.1
63.7
42.3
Major PPT
86
0.81
0.7
84.2
23.9
Minor 5ss
27.1
-2.6
3.7
36.6
47.9
Minor BPS
47.4
-0.1
2.2
69.48
41.2

Associated Gene:

Gene:
EIF2AK3
Ensembl Gene ID:
ENSAPLG00000015496
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016182
22370110 - 22410834
40725