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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_22394239_22395337_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22394239 - 22395337
Intron Length:
1099

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGGCAC
5'SS Class:
major
3'SS Sequence:
ATCTGTTACACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTAAT
U12 Branch Point Sequence:
GCTCTCTGATCT
Flanking Amino Acid:
RGATESSVYLGMYRGQLYLQ
Intron Amino Acid Position:
343

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.58
1
60
40.8
Major BPS
76.7
0.66
1.2
77.9
34.9
Major PPT
70.7
0.47
1
65
39.9
Minor 5ss
25.2
-2.9
3.1
24.5
37.1
Minor BPS
49.3
0.03
1.7
66.8
43.6

Associated Gene:

Gene:
EIF2AK3
Ensembl Gene ID:
ENSAPLG00000015496
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016182
22370110 - 22410834
40725