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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_22398036_22399253_F

Intron Information:

Intron Rank:
11
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
22398036 - 22399253
Intron Length:
1218

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTGAAT
5'SS Class:
major
3'SS Sequence:
ACCCAAATCCTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTCACCCAAAT
Flanking Amino Acid:
YAIKRIRLPNRELAREKVMR
Intron Amino Acid Position:
582

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1.1
71.7
39.6
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
54.6
0.1
0.9
44.1
35.5
Minor 5ss
32.9
-1.9
3.4
48.5
47.3
Minor BPS
46.7
-0.1
2.1
73.76
41.8

Associated Gene:

Gene:
EIF2AK3
Ensembl Gene ID:
ENSAPLG00000015496
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016182
22370110 - 22410834
40725