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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_22399404_22400736_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22399404 - 22400736
Intron Length:
1333

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTTGT
5'SS Class:
strong_major
3'SS Sequence:
TATTTTTTTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
AGCTCTATAATT
Flanking Amino Acid:
KMDEQWLKDESTDWPLSSPS
Intron Amino Acid Position:
632

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
1.1
78.8
38.3
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
87.7
0.85
0.7
81.5
35.9
Minor 5ss
47.5
-0.2
2.6
67.8
43
Minor BPS
58.6
0.35
1.6
71.82
39.5

Associated Gene:

Gene:
EIF2AK3
Ensembl Gene ID:
ENSAPLG00000015496
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016182
22370110 - 22410834
40725