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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_22406742_22408468_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22406742 - 22408468
Intron Length:
1727

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGTATG
5'SS Class:
strong_major
3'SS Sequence:
ATCATTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TTTTTCTTATCA
Flanking Amino Acid:
PFSTQMERVKTLSDVRNLNF
Intron Amino Acid Position:
986

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
82
38.1
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
82.4
0.73
0.8
76.8
36.6
Minor 5ss
38.3
-1.3
3
50.7
45.8
Minor BPS
77.2
0.85
1.5
86.84
31.7

Associated Gene:

Gene:
EIF2AK3
Ensembl Gene ID:
ENSAPLG00000015496
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016182
22370110 - 22410834
40725