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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_22447705_22449724_R

Intron Information:

Intron Rank:
133052
Intron Class:
major
Intron Phase:
Intron Coordinates:
22447705 - 22449724
Intron Length:
2020

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTGTGG
5'SS Class:
major
3'SS Sequence:
CTTTTTCCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTCAC
U12 Branch Point Sequence:
GCTCCACTCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.8
0.42
1.1
54.3
45.2
Major BPS
64.9
0.37
1
67
29.8
Major PPT
89.6
0.89
0.6
85
22.5
Minor 5ss
35.1
-1.7
3.4
47.5
47.9
Minor BPS
42.9
-0.5
2.2
55.78
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018828
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038635
22443351 - 22451115
7765