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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_22449818_22451065_R

Intron Information:

Intron Rank:
133053
Intron Class:
major
Intron Phase:
Intron Coordinates:
22449818 - 22451065
Intron Length:
1248

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAAAAAA
5'SS Class:
major
3'SS Sequence:
CCTCTCCTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCCAAAA
U12 Branch Point Sequence:
AACCTAGCAGCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
0.9
75.4
28.5
Major BPS
47.3
-0.1
1
50.8
30.3
Major PPT
81.7
0.71
0.7
72.7
32.1
Minor 5ss
26.7
-2.7
2.8
30.6
42.8
Minor BPS
33.3
-1.1
2.1
46.26
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018828
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038635
22443351 - 22451115
7765