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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_22488817_22531604_R

Intron Information:

Intron Rank:
149038
Intron Class:
major
Intron Phase:
Intron Coordinates:
22488817 - 22531604
Intron Length:
42788

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAGGC
5'SS Class:
major
3'SS Sequence:
ATTACTATTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATCAA
U12 Branch Point Sequence:
CATTTATTACTA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
66.6
37.7
Major BPS
71.2
0.53
1
72.3
32.8
Major PPT
78.6
0.64
0.9
74.8
39.1
Minor 5ss
30.1
-2.3
3.4
41.8
45
Minor BPS
48.9
-0
1.8
60.79
39.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027654
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034342
22488234 - 22532355
44122