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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_22544762_22544895_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22544762 - 22544895
Intron Length:
134

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAACT
5'SS Class:
strong_major
3'SS Sequence:
CTTTCCTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCAAAA
U12 Branch Point Sequence:
CTTGCTTCAAAA
Flanking Amino Acid:
HYSQLDSCASSTPRCCLASA
Intron Amino Acid Position:
410

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
1
78.1
36.3
Major BPS
68.1
0.45
1
73.5
28.6
Major PPT
90.3
0.91
0.6
88.3
21.3
Minor 5ss
34.7
-1.7
3.3
49.7
46.3
Minor BPS
51.7
0.05
1.8
64.41
42.2

Associated Gene:

Gene:
THNSL2
Ensembl Gene ID:
ENSAPLG00000000600
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024956
22544494 - 22553005
8512
ENSAPLT00000000714
22544494 - 22551324
6831