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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_22561591_22563199_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22561591 - 22563199
Intron Length:
1609

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
CCCTTCTCGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
TCTGTCTCACCC
Flanking Amino Acid:
MELLTGEKAKTVVNMEGNNK
Intron Amino Acid Position:
81

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.1
1.02
0.7
86.6
22.3
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
71.7
0.49
0.9
67.7
32.4
Minor 5ss
30.6
-2.2
2.6
35.8
41.1
Minor BPS
48.3
-0.1
1.9
61.43
44.4

Associated Gene:

Gene:
FABP1
Ensembl Gene ID:
ENSAPLG00000001196
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001213
22560605 - 22563798
3194