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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_22568006_22568484_R

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
22568006 - 22568484
Intron Length:
479

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTCCC
5'SS Class:
strong_major
3'SS Sequence:
CACCTGGATGTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TGATGAT
U12 Branch Point Sequence:
CTGGCTTTATTT
Flanking Amino Acid:
KARLEGVYHEVVKLCRDCLK
Intron Amino Acid Position:
329

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.8
74.9
35.3
Major BPS
69.5
0.48
1.2
59.7
46.7
Major PPT
56.7
0.15
1
50.1
38.1
Minor 5ss
30
-2.3
2.7
36.3
40.6
Minor BPS
51.9
0.14
1.7
66.59
45.3

Associated Gene:

Gene:
SMYD1
Ensembl Gene ID:
ENSAPLG00000002116
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022063
22565514 - 22587379
21866
ENSAPLT00000002330
22565514 - 22587379
21866