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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_22571294_22575661_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22571294 - 22575661
Intron Length:
4368

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTGGG
5'SS Class:
major
3'SS Sequence:
TCTTCACACCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
GCCTTCTTCACA
Flanking Amino Acid:
PNCTVIFNNGKIELRALSKI
Intron Amino Acid Position:
220

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
66
40.1
Major BPS
77.5
0.68
1
79.6
33
Major PPT
71.2
0.48
0.9
63
37.7
Minor 5ss
28.4
-2.5
3.1
31.4
36.6
Minor BPS
56.4
0.2
1.8
62.92
43.8

Associated Gene:

Gene:
SMYD1
Ensembl Gene ID:
ENSAPLG00000002116
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022063
22565514 - 22587379
21866