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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_22599633_22600338_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22599633 - 22600338
Intron Length:
706

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGAACT
5'SS Class:
strong_major
3'SS Sequence:
TCCATCTCTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTCCAT
U12 Branch Point Sequence:
TCTGCTTCCATC
Flanking Amino Acid:
MAVQSTQPVPALQKPAAEKP
Intron Amino Acid Position:
141

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
79.9
32.8
Major BPS
65
0.37
1.3
76.1
38
Major PPT
78
0.63
0.8
69.2
36.9
Minor 5ss
36.3
-1.6
3
48
41.5
Minor BPS
45.8
-0.3
2
57.42
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002674
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021129
22591909 - 22603446
11538
ENSAPLT00000002693
22597301 - 22603446
6146
ENSAPLT00000030540
22591909 - 22603446
11538
ENSAPLT00000029532
22598500 - 22603446
4947
ENSAPLT00000025035
22590627 - 22603446
12820