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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_22600585_22601749_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22600585 - 22601749
Intron Length:
1165

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGCAGA
5'SS Class:
strong_major
3'SS Sequence:
TTCTAACCTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TCTTTCTAACCT
Flanking Amino Acid:
EALLAEVRINDSLFSVAWRG
Intron Amino Acid Position:
223

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
70.7
41.3
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
77.4
0.62
0.9
70
35.3
Minor 5ss
38.9
-1.2
2.8
45.8
44.3
Minor BPS
57.9
0.33
2
78.66
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002674
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025035
22590627 - 22603446
12820
ENSAPLT00000021129
22591909 - 22603446
11538
ENSAPLT00000002693
22597301 - 22603446
6146
ENSAPLT00000030540
22591909 - 22603446
11538
ENSAPLT00000029532
22598500 - 22603446
4947