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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_22623966_22625790_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22623966 - 22625790
Intron Length:
1825

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGAG
5'SS Class:
strong_major
3'SS Sequence:
GCTCTTTCTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAA
U12 Branch Point Sequence:
AAATACACAGCT
Flanking Amino Acid:
LCLWLCLQLPGFCANLRLTQ
Intron Amino Acid Position:
16

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.9
0.94
0.8
75.1
35.1
Major BPS
68.7
0.47
0.9
67.9
25
Major PPT
78
0.63
0.8
73.2
31.7
Minor 5ss
29.8
-2.3
3.3
37.5
47.2
Minor BPS
41.9
-0.5
2
59.82
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002745
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002774
22623920 - 22628289
4370