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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_22666612_22667998_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22666612 - 22667998
Intron Length:
1387

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTACC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTGTCCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
ATTACCATGATT
Flanking Amino Acid:
DALNKMFNGSKLKCPYCPME
Intron Amino Acid Position:
371

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
81.6
29.9
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
80.5
0.69
0.8
72.9
37.4
Minor 5ss
38.7
-1.3
2.7
47.6
34.4
Minor BPS
60.9
0.42
1.6
79.43
36.2

Associated Gene:

Gene:
RMND5A
Ensembl Gene ID:
ENSAPLG00000002419
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002473
22665758 - 22693034
27277