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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_22672608_22673502_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22672608 - 22673502
Intron Length:
895

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTAGG
5'SS Class:
strong_major
3'SS Sequence:
TGGTCCCTCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATAGCATGAAAT
Flanking Amino Acid:
FQPFALNHQKDIQVLMGSLV
Intron Amino Acid Position:
230

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
77.8
38.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
72.3
0.5
0.9
65.8
35.9
Minor 5ss
29.7
-2.3
2.6
33.4
41.8
Minor BPS
47.8
-0
1.9
67.32
42.4

Associated Gene:

Gene:
RMND5A
Ensembl Gene ID:
ENSAPLG00000002419
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002473
22665758 - 22693034
27277