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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_4_22678398_22689402_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22678398 - 22689402
Intron Length:
11005

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TTCTGCGTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
TCAATGTTAACT
Flanking Amino Acid:
VSRVGKAIDKNFDSDISSVG
Intron Amino Acid Position:
96

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.85
0.9
76.4
39.6
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
79.9
0.67
0.9
76.7
37.5
Minor 5ss
35.2
-1.7
3.5
48.8
47.4
Minor BPS
54.2
0.21
2.1
72.89
43.9

Associated Gene:

Gene:
RMND5A
Ensembl Gene ID:
ENSAPLG00000002419
Chromosome:
4

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002473
22665758 - 22693034
27277